Protein domains are distinct, compact units of protein structure that form the functional building blocks of proteins. They often combine with other domains in a mosaic manner giving rise to multi-domain proteins with new or modified functions ('Domain shuffling').

Search results for C2 domain-containing protein-like at Sigma-Aldrich

Each domain forms a compact folded three-dimensional structure. Many proteins consist of several domains. CD-Search is NCBI's interface to searching the Conserved Domain Database with protein or nucleotide query sequences. It uses RPS-BLAST , a variant of PSI-BLAST, to quickly scan a set of pre-calculated position-specific scoring matrices ( PSSMs ) with a protein query. Domain architecture search Search for sequence architectures using the PfamAlyzer either as a Java application (recommended for most users) or as an applet run via Web Start. You may be requested to add the Pfam website to the list of Java security exceptions.

Help pages, FAQs, UniProtKB manual, documents, news archive and Biocuration projects. UniRef. Sequence clusters. Proteomes.

av P Umate · 2011 · Citerat av 90 — Helicases are motor proteins which catalyze the unwinding of duplex nucleic a mutant DHX16 with mutation in the helicase domain accumulated unspliced, the RecQ protein in Escherichia coli, which was identified during a search for

The Pfam database provides alignments and hidden Markov models for protein domains. Data types captured, Protein families. Organisms, all.

xhy:FZ025_02245 DUF3014 domain-containing protein 277 114 ( -) 32 0.302 mhi:Mhar_0898 PBS lyase HEAT domain protein repeat-cont 649 108 ( -) 30

DOMAINATION is a method to identify domains in a protein sequence from similarity searches using PSI-BLAST . DOMO is a database of aligned protein domains. It was obtained from successive sequence analysis steps including similarity search, domain delineation, It is an important way to characterize unknown protein functions because a newly obtained protein sequence often lacks significant similarity with database A Database of Protein Domain Definitions - 3Dee. Introduction. 3Dee contains structural domain definitions for all protein chains in the Protein Databank (PDB), Protein domains: definition of fold & fold classification according to CATH. Performing a search with PDB ID 1T5A (the tetrameric pyruvate kinase structure 20 Jan 2017 PRODRES: Fast protein searches using a protein domain-reduced By using PRODRES, we save on average X percent ofthe search time. Protein sequences containing more than one structural domain are problematic when used in homology searches where they can either stop an iterative Search for: These are a collection of protein pattern and domain database sites.

PROSITE consists of documentation entries describing protein domains, families and functional sites as well as associated patterns and profiles to identify them. Search results for C2 domain-containing protein-like at Sigma-Aldrich To check domain name availability, first, use the search bar at the top of the page to check if your domain exists. Your website name will either be available or taken. If your domain is taken, this means that it is either reserved by the Registry or registered by someone else. These are not true families or proteins, because the domains within each one are not as similar to each other as members of manually curated families and proteins. For example, assignment to an "automated matches" family means the domain could reliably be assigned to the parent superfamily, but could not be automatically assigned to one of the existing families with 100% confidence. To check if a domain name is available, just type it in GoDaddy's search bar and we'll tell you immediately if someone else already owns it.
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A subset of SET domains have been called PR domains. Search results for PH Domain protein at Sigma-Aldrich. Species Human (23035) , Species Mouse (244650) , Species Rat (498949) , Species naked mole-rat (101699656) , Species Domestic Rabbit (100356030) , Species domestic guinea pig (100729093) , Species cow (533130) , Species sheep (101104420) , Species Zebrafish (100101638) , Species Horse (100054529) , Species domestic cat (101080345 Search for protein domain sequences, structures, functions,etc. The SYSTERS Protein Family Database in 2005 Partition of the whole protein sequence space by a fully automatic procedure.

You can also use the keyword search box at the top of every page. Hide this. The Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB. Protein sequences are the fundamental determinants of biological structure and function. SARS-CoV-2 relevant PROSITE motifs PROSITE consists of documentation entries describing protein domains, families and functional sites as well as associated patterns and profiles to identify them [ More / References / Commercial users ].
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Protein domains: definition of fold & fold classification according to CATH. Performing a search with PDB ID 1T5A (the tetrameric pyruvate kinase structure

Proteomes. Protein sets from fully sequenced genomes. Annotation systems. Systems used to automatically annotate proteins with high accuracy: UniRule (Expertly curated rules) Protein evidence scores are generated from several independent sources and are classified as evidence at i) protein level, ii) transcript level, iii) no evidence, or iv) not available. x.

MOTIF Search: Search Motif Library Search Sequence Database Generate Profile KEGG2; Help: Enter query sequence: (in one of the three forms) Sequence ID (Example) mja

CD-Search is NCBI's interface to searching the Conserved Domain Database with protein or nucleotide query sequences.It uses RPS-BLAST, a variant of PSI-BLAST, to quickly scan a set of pre-calculated position-specific scoring matrices with a protein query.The results of CD-Search are presented as an annotation of protein domains on the user query sequence Domain search of protein. I would like to ask if someone know some user-friendly tool which is able to predict and visualize domains in my protein alignment.

xhy:FZ025_02245 DUF3014 domain-containing protein 277 114 ( -) 32 0.302 mhi:Mhar_0898 PBS lyase HEAT domain protein repeat-cont 649 108 ( -) 30 DNA & RNA · Domains & Structures · Genes & Expression · Genetics & Medicine · Genomes & Maps · Homology · Literature · Proteins · Sequence Analysis Currently displaying the top ranked hits from three separate search queries: CATH Superfamilies, CATH domains and PDB entries. Click "View all entries" to Expansion of Protein Domain Repeats2006In: PloS Computational Biology, ISSN 1553-734X, E-ISSN 1553-7358, Vol. 2, no 8, p. 959-970 Article in journal Save search · RSS · Create alerts; Embed results vissa skyddsåtgärder vad gäller transmissibel spongiform encefalopati och utfodring med animaliskt protein. av C Agaton · 2003 · Citerat av 136 — Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. A combinatorial library of an alpha-helical bacterial receptor domain. av P Umate · 2011 · Citerat av 90 — Helicases are motor proteins which catalyze the unwinding of duplex nucleic a mutant DHX16 with mutation in the helicase domain accumulated unspliced, the RecQ protein in Escherichia coli, which was identified during a search for logo, CaMPDB: Calpain for Modulatory Proteolysis Database CT0192, hypothetical protein [synthetic construct], synthetic construct, 666, FASTA CT0179, Chain D, Calpain Domain Vi Complexed With Calpastatin Inhibitory Domain C (Dic) Givet ett protein sekvens, innehåller en typisk effekt från I-TASSER Domain gränser i proteinsekvenser kan förutsägas med hjälp av fritt Marchler-Bauer, A., Bryant, S. H. CD-Search: protein domain annotations on the fly.